FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences119049868
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAGCCGT3573947830.020594394947164No Hit
CAGAGGCC3414052928.677502607562737No Hit
GGTCAATA2755739223.14777199080977No Hit
ATCTTTAG1979720116.62933469191247No Hit
GGGCAATA2152050.18076878506072766No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)