FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410212

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410212
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences113077954
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCCCAC3365064329.758800729627634No Hit
GGCAATGG2719585824.050539506577913No Hit
ACATTACT2574488322.767376035119984No Hit
TTTGGGTA2417481521.378893183723505No Hit
GTTGGGTA4942230.437063974468445No Hit
CAGCCCAA2867850.2536170755264992No Hit
GGCAATGA1676690.14827735563733316No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)