FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410221

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410221
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences108819330
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCATCCG3165591029.090337167119113No Hit
CCTCATTC2741690325.194883114975987ABI Solid3 Adapter A (100% over 8bp)
GTGGCAAT2628716124.156701755101782No Hit
TAATGGGA2177916220.014056326206013No Hit
TAATGGAA1999030.18370173754975336No Hit
CCTCATTA1720150.15807393778292883No Hit
AGCATCCA1183090.10872057381717017No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)