FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410233

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410233
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences137040137
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACTCGGA3837800228.004935517541114No Hit
ATGCTCCG3591896726.210545163129833No Hit
GCTGAATT3511948025.627148927908618No Hit
TGAAGTAC2551103918.615742481343258No Hit
TGTAGTAC3093070.22570540775218284No Hit
CACTCGAA1831920.13367762468013294RNA PCR Primer, Index 47 (100% over 8bp)
TGACGTAC1800660.1313965411461899No Hit
ATGCTCCA1543510.1126319656262457No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)