FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410236

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410236
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences121087086
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGTAAAC3368733927.82075290836547No Hit
ACTGCTCG3152381726.034004154662703No Hit
CTCCTCTA2785919323.0075674626442No Hit
GAAAGGGT2616810621.610980051167473No Hit
GTCCTCTA3315170.2737839442267196No Hit
TGGTAATC2234550.1845407362433348No Hit
CTCCTCAA1243810.10272028513428756No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)