FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410239

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410239
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences115161993
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGCAGC3282902028.506818217361No Hit
ACCCTCCT3158908427.430129660920333No Hit
TGGAATTA2595246322.535614679749422No Hit
CAATGGAG2079182418.054414879742488No Hit
CAAGGGAG11093310.9632787442294437No Hit
CACTGGAG6855180.5952640989809893No Hit
CCATGGAG3046920.26457687303136546No Hit
GGGAATTA2535250.22014641584051087No Hit
CCCCTCCT2459510.21356959322508423No Hit
ACCCTCCA1550990.13467898215342627No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)