FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410245

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410245
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences130316288
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGGAAC3735285528.663228191398453No Hit
TTTCATGA3422798626.265316888093064No Hit
CGCATGTG3135469124.060454361622085No Hit
ACGTCCCT2507623719.24259613656276No Hit
CGCCTGTG2771400.21266719936037468No Hit
CGCATGTA2434600.1868223870833399No Hit
CGCAGGTG2032050.1559321579202747No Hit
GAAGGACC1626180.12478716398060695No Hit
ACGTCCCA1467020.11257380197938112No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)