FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410248

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410248
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences144423239
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTGCG4522907231.317032018649023No Hit
GGACACGT3747705125.9494602527229No Hit
TACTCTTC3361532923.275567860654338No Hit
ATGAGAAA2338589816.192614264799865No Hit
AGGAGAAA25862261.790727044973697No Hit
TACTCTTA1754930.12151299279473991No Hit
CCTGTGCA1484870.10281378608327708No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)