FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410251

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410251
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences125628837
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTAGACC3361651526.758597629937462No Hit
ATCTCTGT3223438125.65842506366592No Hit
TAGCTCTA2907600223.144369313870193No Hit
GGAGAGAG2346482518.677897177381336No Hit
GGAGCGAG52510634.17982298124753No Hit
TAGCTCGA2242840.17852907449903402No Hit
GGCGAGAG1584010.12608649716306775No Hit
CCTAGACA1539990.12258252458390584No Hit
CTCTCTGT1494140.11893288481210726No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)