FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410254

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410254
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences134939938
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGGTAT3875151128.717599529355052No Hit
GGTTCCTC3523361926.110593736896487ABI Solid3 Adapter A (100% over 8bp)
ATCATGCA2984732422.11896970043072No Hit
TAACAAGG2916227421.61129939158561No Hit
CCGGGGAT2370560.17567519558220043No Hit
GGGTCCTC1915400.14194463317450168No Hit
CCGGGTCT1678260.12437088862453753No Hit
GGTTCCTA1608820.11922489544941098No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)