FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410257

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410257
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences137449214
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCCCGT4316311131.402952220592546No Hit
ACAAGGTA3132547722.79058285484266No Hit
GTGGTACC3126724122.748213751153205No Hit
TACTATAG2887602621.008505730705743No Hit
TACTCTAG5183490.37712038135045284No Hit
GGGGTACC2144650.15603217636442795No Hit
TCCTATAG1732910.12607638483840292No Hit
CGTCCCGG1458320.1060988242537349No Hit
ACCAGGTA1385400.10079359202446948No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)