FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410263

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410263
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences149805316
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCCACT4455862429.744354332525823No Hit
ACTAGGAG3479597923.227466106743503No Hit
GTCGATGC3441050222.97014746793098No Hit
TGATTCTA2963006919.77905043102743No Hit
ACTCGGAG33184642.2151844064065123No Hit
CAGCCACA4735070.316081573500369No Hit
CAGCCCCT4212490.2811976311975471No Hit
ACGAGGAG3799050.2535991446391662No Hit
TGTTTCTA1940250.12951810067941782No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)