FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410272

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410272
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences131553544
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAGCCGT4096629631.140397099450247No Hit
CAGAGGCC3950106630.026607264947568No Hit
GGTCAATA2609129519.83321331122786No Hit
ATCTTTAG2300698217.48868278303472No Hit
GGGCAATA1774890.13491768796437745No Hit
ATCTGTAG1677100.12748421281603786No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)