FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410275

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410275
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences115201848
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCCCAC3144538027.295898933843493No Hit
GGCAATGG3115554027.0443057475953No Hit
TTTGGGTA2554336822.17270681282821No Hit
ACATTACT2479725821.525052271730917No Hit
GTTGGGTA3328980.28896932278378035No Hit
GGCACTGG2239590.19440573557465848No Hit
GGCAATGA2023560.17565343222619137No Hit
CAGCCCAA1745720.15153576355823736No Hit
GGCCATGG1464950.1271637586924821No Hit
ACCTTACT1355790.11768821625153096No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)