FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410284

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410284
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences150475731
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCATCCG4547201230.218834424535874No Hit
CCTCATTC3697412624.57148787667295ABI Solid3 Adapter A (100% over 8bp)
GTGGCAAT3328145222.11748816824156No Hit
TAATGGGA3231616221.47599601958405No Hit
TAATGGAA2796920.18587183337889884No Hit
CCTCATTA2259050.15012719891688048No Hit
AGCATCCA1880580.12497563477528478No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)