FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410287

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410287
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences144596874
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCACAGT4428140930.624043089617555No Hit
GGATGCCG3552285924.56682362303351No Hit
TATGATTC3179039521.985534071780833No Hit
ATGCTGAA3056731421.139678303142293No Hit
CCCACCGT2103010.14543952035920224No Hit
TATGTTTC1712220.11841334827196887No Hit
CCCACAGA1468560.10156236157636436No Hit
TATGATTA1452790.10047174325497521No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)