FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410293

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410293
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences107947627
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCAGC4323576640.052539552351625No Hit
ACAATTCA2491528123.080897368869444No Hit
CATCACTT2432765722.536537093122018No Hit
GTGTGGAG1154941810.699093922648249No Hit
GTGGGGAG21163651.960547960910711No Hit
GGGTGGAG2436550.22571593908219958No Hit
CATCACTA2067650.19154195950967962No Hit
GGCGCAGC1423870.13190377959860108No Hit
CCTCACTT1181580.10945863589942556No Hit
TGCGCAGA1165630.10798106752267932No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)