FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410299

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410299
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109210661
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCCCT3558176132.58084940993077No Hit
GGATGGGC2758595325.259395692147674No Hit
CCGATTAA2480483122.712829290539684No Hit
AATCAATG1975323518.087277211883187No Hit
TTCGCCCA1283850.11755720441981392No Hit
CCGATAAA1119260.10248633143974835No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)