FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences114250087
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGGGCA3759725732.90785852968322No Hit
TGCCTCAT3061510626.796571279635No Hit
AATAATGG2706871923.69251500001046No Hit
GTGTCATC1717907415.036377171423949No Hit
TGGCTCAT2541910.22248648265799567No Hit
AATAATGA2012730.1761687936395182No Hit
CCAGGGCC1262260.1104821915803005No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)