FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410317

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410317
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences110442460
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGTGTTT3110571128.164630704531575No Hit
CTCGTCAC2901706326.273466744583562No Hit
GATCAGCA2629803723.811527740327406No Hit
ACAACAGG2199980119.919694834758296No Hit
TGGTGTTA4040300.3658285047254471No Hit
GGGTGTTT2641740.2391960483314117No Hit
ACAACAGA1587470.1437372908933756No Hit
CTCGTCAA1159030.10494423974257727No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)