FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410320

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410320
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences94952960
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCTGA2657628427.98889471165512No Hit
GGGCTCTC2543397126.785864284799548No Hit
CATTAGCG2192086523.086025964856706No Hit
ACAAGAAT1910625120.121806629303602No Hit
GGGGTCTC5814650.612371641705535No Hit
TTCACTGA1208560.1272798657356232No Hit
GGGCTCTA1145350.12062288526866356No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)