FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410329

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410329
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences119205452
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTCCA3443225228.884796309484233No Hit
CGCTATGT3122195226.1917147883471No Hit
AAACCGAG2854178623.94335621494896No Hit
TTGAGATC2217802518.60487471663628No Hit
GTGAGATC7336670.6154642994013394No Hit
AACCCGAG3803450.31906678228106544No Hit
GCTGTCAA1932430.1621091961464984No Hit
CGCGATGT1634110.1370834951408095No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)