FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410332

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410332
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences105840145
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCACGCT3903764236.88358703590212No Hit
CGTTAATC2414066122.80860537369823No Hit
AAGGGTGA2353621222.237509217320138No Hit
TTACTCAG1766262616.688021355223956No Hit
GCCACGCA1759670.1662573308077006No Hit
GCCACGCG1321200.12482976095696013No Hit
CGTTAATA1102990.10421282019218701No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)