FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410335

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410335
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences103752974
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGAACT3027454429.17944694288956No Hit
GCATTCGG2729381526.306537487783245No Hit
CAGCGGAA2386722523.003894808836996No Hit
ATTACTTC2082006120.066953454269175No Hit
GCATTCGA1500240.14459730089279177No Hit
CAGCGAAA1303030.12558965297707997No Hit
TGCGAACA1205080.11614895973969865No Hit
ATTACTTA1042690.10049736020097119No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)