FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410338

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410338
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences117622798
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCGAT3571259730.361968604079625No Hit
ACCCGACG3370917428.658707812749025No Hit
TGATATTC2338175019.87858680253466No Hit
GTGATCGA2298957819.54517184670271No Hit
TGTTATTC3315500.28187562754628576No Hit
ACCCGACA1854950.15770327109545548No Hit
CCTGCGAT1181910.10048307131751788No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)