FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410344

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410344
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences129836739
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAGCAC3784302629.14662389972687No Hit
TTAGCTCG3294219025.37200968979974No Hit
GACCTATT3138108024.1696458503937No Hit
ACTTAGGA2547260019.618946221377296No Hit
GTAGCTCG4441410.34207652119174065No Hit
GACCTATA1991950.15341959566621588No Hit
ACTTAGAA1313570.10117090202026716No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)