FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410347

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410347
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences128309925
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGACGCG3594245428.01221651403818No Hit
GGTCGTAC3584996127.940130897902094No Hit
TCCTTCTT3007766123.441414216398304No Hit
AAAGAAGA2447246819.07293453721526No Hit
GCCTTCTT3058480.23836659556928275No Hit
TCCTTCTA2419050.18853179128582612No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)