FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410350

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410350
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences129239060
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTCCCA3628428528.075324131883967No Hit
GTCCTAAC3477605326.90831471538094No Hit
ACAGAGGT3353094525.944900094445135No Hit
TATAGTTG2253315117.435248291035233No Hit
GATAGTTG2525500.19541305855985025No Hit
CGGTCCAA2480380.19192185396582118No Hit
ACCGAGGT2347170.18161459855867104No Hit
TATAGTTA1621660.12547754525605495No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)