FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410353

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410353
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences124529704
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTTGGT3757926830.17695119551557No Hit
AAACCTCA3270155326.26004234298991No Hit
CTGGACTC2759569422.159929007781148No Hit
TGTAGAAG2422563019.453695963173573No Hit
GCCGTGGT4504580.361727351411676No Hit
AAACCTAA1363010.10945260096338139No Hit
AAAACTCA1283510.10306858193447564No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)