FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410356

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410356
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122898752
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCTCTCG3608400429.36075705634505No Hit
AATCTCTC2947093123.979845621215095No Hit
CGGAGGGA2730732322.21936557988807No Hit
TCAGAAAT2699395521.96438495974312No Hit
CATCTCTC5073070.4127845008548175No Hit
ACTCTCTC2784220.22654583180795845No Hit
TATCTCTC2375600.19329732493947538No Hit
GTCTCTCA1784070.1451658353699149No Hit
AATCTCTA1777740.1446507772511799No Hit
CGGAGGAA1663480.1353536934207436No Hit
GATCTCTC1455960.11846824937652743No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)