FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410359

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410359
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences116743756
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGTTAT3405440229.170212752106416No Hit
TAGACACC3143449326.926059326033673No Hit
CCACAGGG2537511221.73573377234839No Hit
ATTTGCTA2368727920.289975080123344No Hit
GGCGGTAT3425750.2934418179932467No Hit
CCACAGGA2702140.23145905978903059No Hit
TAGACACA1950690.1670915916051219No Hit
GGCGTTAA1195280.1023849189844466No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)