FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410362

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410362
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101932905
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGCCTT3339810132.76478875982196No Hit
TCTCGGGC2800578027.474719767870837No Hit
AGGATACA2176184421.349184544480508No Hit
GTATATAG1683146016.51229306179393No Hit
CACGCCTA3073360.3015081341986673No Hit
CACGCCGT2126450.20861271441248536No Hit
GTATCTAG1927510.1890959548342118No Hit
GGATATAG1274720.12505480933757357No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)