FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410365

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410365
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96304592
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCTTCG2659344527.61389093471265No Hit
CGTGCAGA2547727626.454892202855707No Hit
GTATGCTC2278687923.66125906021179No Hit
AACAAGAT1922217719.959772011702203No Hit
AACCAGAT7057910.7328736723166845No Hit
AACACGAT1722020.17880974979884656No Hit
TCGCTTCA1208960.12553503160056997No Hit
TCGCGTCG1106130.11485745144945944No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)