FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410371

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410371
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences112821347
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATCTCC3009875826.678247335586235No Hit
AACGTCAA3007362426.655969636668136No Hit
CTGCGATG2772767824.5766237837951No Hit
TGTAAGGT2293645120.329885797233036No Hit
GCCTCTCC2951420.2616012021200208No Hit
AACGTAAA2414130.2139781224203962No Hit
GCATCTCA1842630.16332281514064886No Hit
GGTAAGGT1484020.13153716379578415No Hit
CTGCGATA1178040.10441640977748652No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)