FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410386

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410386
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences129881886
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTCGC3794940229.218394626637927No Hit
AGCTGGAT3282347625.271788862074267No Hit
CATGAACA2909729722.402890731044668No Hit
GTGACTTG2815048021.67390763019872No Hit
TCACTCGA1530450.1178339834085871RNA PCR Primer, Index 47 (100% over 8bp)
GTGACTTA1503340.11574670235386017No Hit
GTGTCTTG1466350.11289873015856884No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)