FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410389

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410389
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences127512310
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGTTG3519287427.59958940434849No Hit
CCGATAGC3393320826.611711449663172No Hit
ATACCCAA2874924022.54624671139594No Hit
TATGAGCT2735698821.454389776171414No Hit
GATGAGCT2765620.21689043199044863No Hit
ATACCAAA2347650.1841116359667549No Hit
GGCGGTTG1572040.12328535182211035No Hit
GGCTGTTA1563880.12264541360751757No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)