FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410395

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410395
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences132178996
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACCCTAC3814539728.858894494856052No Hit
TCTAGCGA3359832625.41880859800146No Hit
CTGTAACT3210785624.291193738527113No Hit
AGAGTGTG2652531220.06772089568603No Hit
GACCCTAA1529620.11572337862212238No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)