FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410401

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410401
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences113709661
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTCCAA3307882829.09060471123909No Hit
GATGTGGT2887877425.396939667246038No Hit
AGGAGATG2537406422.31478291013461No Hit
CTACATCC2334009220.526041318512064No Hit
CGGAGATG9307780.8185566572043513No Hit
TCCTCAAA3316230.29164012721839No Hit
CTACATCA2454080.2158198325822113No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)