FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410404

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410404
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122284243
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCCGTT3940581632.22476995666563No Hit
GGAGGAGG2812976423.00358845088488No Hit
TTGTTTCC2721574122.25613074286276No Hit
CCTAACAA2531328020.700361206799144No Hit
AACCCGGT3049680.24939272020516987No Hit
AACCCGTA2603720.21292358983650903No Hit
TTGTTTCA1855380.15172682550768213No Hit
CCTAAAAA1312420.10732535671010368No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)