FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410407

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410407
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences124779488
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCATGGT3814707130.571588016132907No Hit
CAAGCTCC3637887029.15452738514202No Hit
GTTCACTG2923203723.42695700113788No Hit
TCGTGAAA1912785015.329322396322063No Hit
CAAGCTCA2574650.2063359965060924No Hit
GTTCACTA1344400.10774206735004394No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)