FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410413

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410413
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86939285
Sequences flagged as poor quality0
Sequence length8
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGAAAG3114346835.82208894402571No Hit
GAAACCCT2772543831.890575129528614No Hit
TTTCTGTC2534914029.15729063104211No Hit
CCGTGTGA8483920.9758442342837302No Hit
AGCGACAG5152400.5926434752712769No Hit
GAAACCCA1410840.1622787673029517No Hit
TTTCTGTA1409300.16210163219078694No Hit
AGCGAAAA916180.10538158900202596No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)