FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410419

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410419
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences134856352
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATAGGCCA3482802025.82601374238568No Hit
CGCTTAGC3429540825.431066087268917No Hit
GAGACTAT3233809123.97965725782053No Hit
TCTCAGTG3137009423.26185866276436No Hit
AGAGGCCA1754190.13007841113780091No Hit
CGCTTAGA1438210.10664755339073682No Hit
TCTCAGTA1367640.101414577787185No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)