FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410422

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410422
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences129022869
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTATG3446025626.708641861002175No Hit
CAATACCC3442873326.684209758194104No Hit
ACCACGAA3076593023.845330861461466No Hit
GTGGGTGT2693265720.87432810070283No Hit
CAATACCA3560020.2759216275062059No Hit
GGTCTATG2390990.18531520950754862No Hit
GGGGGTGT2032650.1575418385712691No Hit
TGTCTATA1792410.13892188368559685No Hit
ACCACAAA1659180.12859580730606757No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)