FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410428

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410428
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109829229
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTGGCT3242382529.522036433488942No Hit
CGGGCTTA2690067824.493186599716545No Hit
TTCATCGG2451889322.32456079610647No Hit
AAACAAAC2430870322.13318186909971No Hit
TTCATCGA1849620.16840872114289357No Hit
AAACAAAA1731800.1576811579001433No Hit
CGGGCTAA1576300.14352281394964542No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)