FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005410431

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410431
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences115174452
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCCAGC3901662333.87610908710901No Hit
GTCAGCTA2724967623.659479621400763No Hit
CGATAGCT2549228022.13362386998811No Hit
AATGTTAG2158330718.739665459836527No Hit
AATGGTAG2790170.24225598225550926No Hit
TCGCCAGA1531100.13293746776411838No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)