FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005410452

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005410452
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54517676
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGCACCATCGGGATGTCCTGATCCAACATCGAGGTCGTAAACCCTAT592320.10864733118851214No Hit
CTTTGTGTTTGAGTGGGTGTGGGTATAATACTAAGTTGAGATGATATCAT589100.1080566970609679No Hit
GAGGTCGTAAACCCTATTGTTGATATGGACTCTAGAATAGGATTGCGCTG582680.10687909734083309No Hit
GTAAACCCTATTGTTGATATGGACTCTAGAATAGGATTGCGCTGTTATCC564530.10354990187035852No Hit
TGCACCATCGGGATGTCCTGATCCAACATCGAGGTCGTAAACCCTATTGT560530.10281619487962033No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)