EGAF00005410462 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005410462
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	29785548
Sequences flagged as poor quality	0
Sequence length	80
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCTAGCGCTGTGTAGATCTC	42342	0.14215618930361798	Illumina Single End PCR Primer 1 (96% over 31bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	6495	49.959106	57
TCTAGCG	6905	49.666924	31
GCCGTAT	6825	47.589325	58
TAGCGCT	7225	46.896408	33
CGTATCA	6930	46.759464	60
CTAGCGC	8120	42.2803	32
CCGTATC	7920	41.429974	59
GTCTAGC	9065	37.913956	30
GTAGATC	9295	37.257034	42
TCTCGGT	9560	36.10551	47
TAGATCT	10240	33.7465	43
GGTCGCC	10155	33.55595	54
GTATCAT	9935	32.769653	61
GTCGCCG	10695	32.06914	55
TCGCCGT	10335	31.14579	56
ATCTCGG	12125	28.83371	46
TCGGTGG	12255	28.649076	49
TGTCTAG	12255	28.075068	29
GTGTAGA	12585	27.902536	40
CGTGTAG	12520	27.478567	14