EGAF00005411337 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005411337
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	860628
Sequences flagged as poor quality	0
Sequence length	61
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	5936	0.6897288956436463	No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGAGATGTTGGAAC	1192	0.13850351138935754	No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCATAA	1154	0.13408813099271694	No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAACCAATGAGA	1141	0.13257760612018202	No Hit
TTGATATTCTCTGCATCCTATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTT	1032	0.11991243603508137	No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATCCCTACTCA	879	0.10213472022755476	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGAGTAT	20	2.6134631E-4	54.99913	30
TTAAACG	50	8.301868E-9	44.004417	22
GGCACCA	25	7.85599E-4	43.999302	47
TGGTATC	790	0.0	38.297207	2
GAGTATA	30	0.0019255043	36.666084	31
CGGCACC	30	0.0019255043	36.666084	46
GTGGTAT	845	0.0	35.499622	1
ATCCTAG	35	0.004099385	31.428076	7
TTCACGT	35	0.004099385	31.428076	13
GGACTCG	35	0.004100551	31.426247	5
AAGTACG	55	3.4902125E-5	29.999525	35
AATGGCG	55	3.4902125E-5	29.999525	29
GTATCAA	3325	0.0	28.223879	1
GGTGGAC	40	0.007865967	27.50436	2
TCGTGCA	70	5.6977224E-6	27.504358	2
CGGTTTT	110	3.947207E-10	27.50276	19
TATCTTG	70	5.7002962E-6	27.50276	21
ATAAGGT	90	4.7148205E-8	27.501163	3
CCTAGCA	40	0.007872662	27.499565	9
GGTCAGC	110	3.947207E-10	27.499565	8