EGAF00005411338 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005411338
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	743096
Sequences flagged as poor quality	0
Sequence length	91
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1483	0.19957044581050093	No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA	1285	0.1729251671385662	No Hit
GTATCAACGCAGAGTCGAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1204	0.16202482586368383	No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC	1111	0.1495096192147448	No Hit
GTGGTATCAACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTT	920	0.12380634534434312	No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC	857	0.1153283021305457	No Hit
GGTATCAACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	845	0.11371343675648908	No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA	822	0.1106182781228805	No Hit
CTTATACACATCTCCGAGCCCACGAGACGGAGCTACATCTCGTATGCCGT	787	0.10590825411521526	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTCA	75	1.8189894E-12	56.665947	3
CATATAG	80	1.128501E-8	42.499462	2
CGACTTT	305	0.0	40.40932	3
TACGTGC	65	5.5571763E-6	39.232914	6
TATACGT	55	9.559288E-5	38.63587	4
GCGTCAG	110	1.1277734E-10	38.63587	4
GTCGACT	325	0.0	37.9277	1
ACGTGCA	45	0.001662222	37.77984	7
GTATCAA	3955	0.0	35.89565	1
ATACGTG	60	1.5951069E-4	35.416218	5
AACGCAG	4315	0.0	32.307674	6
TATCAAC	4620	0.0	31.27666	2
GACTTTT	405	0.0	30.431715	4
GCACCTT	85	3.4878998E-5	30.001638	6
AGTTGGA	100	3.092773E-6	29.74962	2
CGTCAGA	145	2.1827873E-9	29.309975	5
TAGTGCC	190	1.8189894E-12	29.080536	7
TCAACGC	5345	0.0	27.193295	4
CGGATCC	110	6.492861E-6	27.04511	4
CAACGCA	5400	0.0	26.916327	5