EGAF00005411354 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005411354
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	795501
Sequences flagged as poor quality	0
Sequence length	91
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2444	0.30722777218381875	No Hit
CTTATACACATCTCCGAGCCCACGAGACCGTACTAGATCTCGTATGCCGT	2229	0.28020077913164154	No Hit
GTATCAACGCAGAGTCGAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1851	0.23268355413758124	No Hit
GTGGTATCAACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTT	1484	0.18654910553223691	No Hit
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAA	1299	0.16329332081292167	No Hit
GGTATCAACGCAGAGTCGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1260	0.15839074998020114	No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC	1096	0.13777481109388925	No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC	995	0.12507840970658743	No Hit
GTGGTATCAACGCAGAGTCGAGGGTTTTTTTTTTTTTTTTTTTTTTTTTT	985	0.1238213402623001	No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA	928	0.11665604442986244	No Hit
TTGATATTCTCTGCATCCTATTTAGGGCTATTGATATTTAACAAATATCC	921	0.11577609581886132	No Hit
GTCTTAGCAGTAGTTTATAAGGAATATATCCCATTTTTAGTTATAATGAT	863	0.10848509304199493	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTGGTAT	1110	0.0	45.954063	1
AGCGTCA	65	1.05972504E-7	45.771564	3
CGACTTT	475	0.0	44.739124	3
TACAGGG	60	3.2064781E-6	42.50217	2
TCGAACA	50	5.448813E-5	42.50217	4
ATCGAAC	50	5.448813E-5	42.50217	3
CGAGGCA	40	9.318219E-4	42.499496	9
GTCGACT	535	0.0	41.315712	1
CTCGGTG	135	0.0	40.928013	2
ACTCGGT	140	0.0	39.471264	1
GTATCAA	5220	0.0	38.354477	1
TGGTATC	1375	0.0	37.711014	2
CAGCGTC	80	5.4077464E-7	37.1894	2
CTCACTC	80	5.4077464E-7	37.1894	3
GGTACTA	60	1.5952002E-4	35.416245	7
CCTACGG	85	8.6919863E-7	35.001785	2
CGGTGGT	160	0.0	34.533012	4
GCATAAG	100	8.047937E-8	34.00601	1
AGGGTGC	100	8.05685E-8	34.001736	6
GCGTAAT	165	0.0	33.490765	1